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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs34552320 chr1:31288786 G/A 2.38E-8 487 16.22 15 10.42 KM Plot
THCA rs34564922 chr6:99470052 G/A 1.79E-5 489 15.32 19.17 25.13 KM Plot
THCA rs34574317 chr16:20614488 C/T 1.94E-6 490 15.87 17.55 17.08 KM Plot
THCA rs34586953 chr16:20684831 C/A 1.82E-6 478 15.97 14.8 42.77 KM Plot
THCA rs34587508 chr5:81193460 A/G 0.000277 486 15.93 14.95 27.82 KM Plot
THCA rs34588176 chr10:81728993 A/G 0.000198 490 15.93 15.9 13.5 KM Plot
THCA rs34603209 chr3:56560045 CA/C 6.08E-5 488 16.67 12.6 8.97 KM Plot
THCA rs34636341 chr5:113059587 G/T 0 486 15.27 17.77 14.8 KM Plot
THCA rs34637390 chr1:22424833 GA/G 7.26E-9 473 15.9 19.48 6.57 KM Plot
THCA rs34653637 chr6:99339149 AAAG/A 2.17E-5 489 15.63 18.77 25.13 KM Plot
THCA rs34666100 chr5:81216968 C/T 0.000262 488 15.9 15 27.82 KM Plot
THCA rs3469 chr6:24425690 A/G 6.22E-15 487 16.33 14.85 11.07 KM Plot
THCA rs34698709 chr16:20850993 T/C 4.8E-5 490 16.37 14.67 17.47 KM Plot
THCA rs34698836 chr15:54210476 CCA/C 3.84E-12 485 15.68 17.73 12.6 KM Plot
THCA rs34706258 chr4:110761904 T/G 0.000311 484 15.87 16.23 16.5 KM Plot